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Standards for data exchange in public repostitories
John Quackenbush, Data standards for 'omic' science, Nature Biotechnology 22, 613 - 614 (2004). (Access restricted to subscribers.) Quackenbush reviews various efforts of standardization of data release in the bioinformatics community, in particular the area of DNA microarray analysis. One aspect is a requirement among many journals (including Nature) that data be deposited in a public archive. Quackenbush describes the development of the Minimal Information About a Microarray Experiment (MIAME) standard and its adoption by many journals and databanks. What remains to be done, the author suggests:
The greatest value of all of the 'omics' data that is being generated will probably come when we stop considering microarray or proteomic or metabolomic or any other data set as independent and realize that together they provide us with complementary views of the fundamental biological processes we are studying. Consequently, we need to consider methods that will place these diverse data into a common reference frame that can organize the information in a manner facilitating its interpretation.(This consideration of data as well as journal articles reminds one of a posting in the first Nature open access forum; see Gertstein and Junker, Blurring the boundaries between the scientific 'papers' and biological databases, 7 May 2001.) |
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