Open Access News

Retrovirology -- Fulltext v1+ (2004+) BioMed Central | PubMed Central; ISSN: 1742-4690.

Abstract (provisional): This editorial introduces the new online, open access, peer-reviewed journal Trials. The journal considers manuscripts on any aspect of the design, performance, and findings of randomised controlled trials in any discipline related to health care, and also encourages the publication of protocols. Trialists will be able to provide the necessary detail for a true and complete scientific record. They will be able to communicate not only all outcome measures, as well as varying analyses and interpretations, but also in-depth descriptions of what they did and honest reflections about what they learnt. Trials also encourages articles covering generic issues related to trials, for example focussing on the design, conduct, analysis, interpretation, or reporting.

PS: In the US, the highly-regarded and publicly-funded Congressional Research Service (CRS) reports are not generally OA. Citizens who want copies often have to pay private-sector publishers, as do agencies of the federal government.

In the last several days there have been several stories in the news that highlight the increasing tension between ownership of intellectual property rights (IPR) and the opportunities that become available when broader, free access to those rights is made available.  The three articles that struck me as best proving this point were the announcement by Sun Microsystems that it had released the design for its new UltraSPARC processor under the GNU GPL, a speech by Tim Berners-Lee to an Oxford University audience in which he challenged the British government to make Ordinance Survey mapping data available at no cost for Web use, and reports that a Dutch court had upheld the validity of the Creative Commons license.  Each of these stories demonstrates a breach in traditional thinking about the balance of value to an IPR owner between licensing those rights for profit, or making those same rights freely and publicly available.

In the case of the Sun announcement, that breach is expansion of the open source methodology form software to silicon - a genetic leap, if you will, from one species of technology to another. Tim Berners-Lee’s challenge, on the other hand, is an example of the increasingly popular concept that "data wants to be free," and that the greatest societal benefit may result from allowing it to be so. And the Creative Commons victory demonstrates that traditional legal concepts can be adapted to successfully accommodate such new realities....

What this demonstrates is that the broad concept of open source is extensible into many types of situations, and may be managed in multiple ways. In the first case, the approach has moved from software to chip designs, and the initiative is organized on an open source software project model. In the second case, raw data is involved, and the delivery mechanism is through public (the Ordinance Survey example) or private (the Google example) means, for two entirely different motivations. In the third case, it is works of authorship of all types (literary, music, art, etc.) released by the individual author/owner, who may set the boundaries of that access through the simple means of referring to a specific variation of a publicly available license.

What this shows me is that the envelope of free use and public availability of IPR will continue to be pushed in more and more directions, and managed in more and more novel and situationally appropriate ways.  Crucial to this process will be the accumulating evidence in more and more domains that the owners of IPR may gain (indirectly) more by giving than selling (directly).  This is not as novel as might first be imagined.  IPR has always been a means to an end, rather than an end in itself....As more and more examples accumulate in increasingly diverse areas where IPR owners demonstrably gain by giving, it can be assumed that the owners of IPR in other areas will give thought to how the technique may be adapted to their own IPR assets and situations.  At some point, the inevitable tipping point will be reached, where an IPR owner will automatically consider which world she wishes her work to live in - open or closed, or in both, depending upon the specific use or user obtaining rights to use the IPR.  Is this inevitable?  Personally, I think it is.  This is one of those examples where the Internet really has "changed everything."...I strongly doubt that the open source concept will be applied to every area of endeavor, or that it will predominate in every area where it is applied.  But I also believe that we may be surprised at some of the areas not yet imagined where it springs up next....

Updegrove's article has spawned a Slashdot thread.

Since the relaunch of GreyNet by TextRelease in 2003, authors both in the [Grey Literature] Conference Series as well as those contributing to The Grey Journal (TGJ) sign-on to a “non-exclusive rights agreement”. The authors remain free to deposit their own work in other online repositories, which they deem fit. This non-exclusive rights agreement further allows GreyNet to negotiate licensing and cooperative publishing exchange of the full text and metadata contained in its in-house content base."

Comment. In an email accompanying the announcement, TextRelease says that the grey road is a third path beyond the gold and green roads to OA. I must disagree. I applaud TextRelease for letting its authors deposit their work in OA repositories. But that's the green road. Many different rights agreements with publishers are compatible with OA archiving and TextRelease's agreement is just another in the series.

The Secretariat introduced relevant documents (UNEP/CBD/COP/8/17, 17/Add.1, and 18). COLOMBIA stressed repatriation of information and, supported by many, collaboration with other initiatives. CANADA urged parties to provide free and open access to information and, supported by the EU, suggested reference to the Global Biodiversity Information Facility. CHINA and CAMEROON highlighted supporting national clearing-house mechanisms.

The Beilstein Journal of Organic Chemistry (BJOC) is now included in PubMed Central, the world's largest digital archive of freely available full-text journal literature. PubMed Central hosts over 200 journals, mainly in the life sciences and medicine. BJOC is one of the first chemistry journals to be accepted for inclusion in the database, which will bring its articles to the attention of an enormous worldwide readership of biomedical scientists.

BJOC is published by the Beilstein-Institut, a name synonymous with quality in organic chemistry for two centuries, in co-operation with BioMed Central, the leading global publisher of open access journals. As one of the first open access journals in chemistry, BJOC allows readers free access to all content immediately upon publication. BJOC has no publication charges, is fully refereed and offers rapid publication. Authors may submit their articles online to the Editor-in-Chief, Professor Jonathan Clayden of the University of Manchester, UK. (www.beilstein-journals.org/BJOC).

Dr Martin Hicks, Director of the Beilstein-Institut, said 'Our objective in publishing BJOC is to serve organic chemists worldwide by providing a high quality journal that serves their needs as authors and readers, without being a financial burden to their institutes. We are delighted that inclusion in PubMed Central will bring the high quality articles published in BJOC to the attention of the growing number of biomedical researchers with an interest in organic chemistry and chemical biology.'

Beilstein Journal of Organic Chemistry Fulltext v1+ (2005+) BioMed Central | PubMed Central; ISSN: 1860-5397.

Most researchers who are funded by the US National Institutes of Health (NIH) do not provide free public access to their papers by posting them on PubMed Central, says an NIH report. Mandatory posting may be necessary to ensure that free access is given in future, says the report. Prodded by federal departments and Congressional committees, the NIH last year announced a policy on public access to increase the availability of research that it funds. It asked researchers to submit their final, peer reviewed manuscripts to the PubMed Central database—the NIH's free digital archive of journal literature in the biomedical and life sciences—when their paper was accepted by a journal. However, less than 4% did so.

We – meaning you and I dear reader -- have paid for some really bad things through our public research dollars. Exhibit A: In the late 1990’s the research arm of the U.S. Dept of Agriculture teamed up with Delta and Pineland Co. to genetically engineer seed to make it sterile in the second generation, thus forcing farmers to buy seed every year. This rogue technology was named “Terminator Technology.” It’s not hard to see that Terminator was as anti-farmer and anti-consumer as any invention created. This hijacking of our research dollars prompted a group of us to draft a paper defining public interest research because we believed that when public money was involved, the public had a right to expect that research it funded would serve the public interest. It should add to the commonwealth and common health, not subtract from it. In that paper we said that public interest research “will be identified by its beneficiaries, the public availability of its results, and public involvement in the research. These key benchmarks identify public interest research:

• The primary, direct beneficiaries are society as a whole or specific populations or entities unable to carry out research on their own behalf.
• Information and technologies resulting from public interest research are made freely available (not proprietary or patented); and
• Such information and technologies are developed with collaboration or advice from an active citizenry.”

Here are the OA-related excerpts from the paper Raffensberger wrote with 10 co-authors, Defining Public Interest Research (a 1999 white paper for the Science and Environmental Health Network; The Center for Rural Affairs; and the Consortium for Sustainable Agriculture, Research and Education) :

How are the data and results of publicly funded research kept in the public domain? Are they made available through the internet, public libraries, journals, press releases for media stories? Who decides how such results are used? ...Some would say that keeping information in the public domain does not rule out profit. The computer industry is experiencing the benefits of freely available programs and operating systems developed by volunteers. In some cases, companies continue to invest in systems they will not be able to own, and both the public and the company profit from the development this stimulates. But others wonder whether research that results in financial gain to universities, hospitals, and corporations qualifies as public interest research. American agriculture and society as a whole have benefited from the freely available information coming from publicly funded experimental stations and universities. This has begun to change, however, as patent laws assign ownership to information developed at public expense. While the privilege of patenting genes and organisms encourages investment in research and marketing to exploit these technologies, it also directs public money to private gain. When public funds have supported any aspect of research, it is difficult to reconcile the issuing of patents and the sealing off of proprietary information with the public interest.

So, where are we with IOAs [Institutional Open Archives] in the UK? Five years is certainly long enough to determine a trend, and it is clear that the trend is for growth. In search of the trend, I examined the sites of those universities in the UK with IOAs (26 in all)....[PS: Omitting notes in sites included and excluded.] The cumulative growth curve looks impressive, but the picture revealed by the annual number of items recorded suggests that, rather than growing rapidly, the curve has levelled out....In fact, the data shows a very patchy record for the 22 archives, and one institution, the University of Southampton, holds more than 50 per cent of all items recorded over the period. Had I included departmental archives, the prominence of Southampton would have been even greater, as the Department of Electronics and Computer Science has an archive of 9,342 items – more than the total in the institutional archive – and if these were included Southampton would hold more than 75 per cent of the new total of 19,168 items....[I]n general, the humanities and social sciences are less well represented in IOA than are science, medicine and engineering....This suggests that universities in the UK may be finding it very hard to get the message of IOA through to all their constituent departments....By any measure it can hardly be claimed that the concept of open archiving has taken off in British universities and I don’t think that any of its protagonists would claim otherwise. The movement is at an early stage, with something in the order of 12 per cent of UK universities involved and with a minuscule proportion of the total research output covered by the IOA. For 2004, a search of the Web of Science for papers by authors whose address included ‘England’ produced 58,710 items and, when we exclude the Scottish universities from the table (since Scottish addresses were not searched for), we find that fewer than 2,000 of these have been archived in institutional archives....

Those institutions that are involved appear to be having difficulty in getting academics to contribute, perhaps because they are putting insufficient effort into the process, but also, perhaps, because the whole idea of self-archiving in institutional archives is based upon false assumptions about the behaviour of academic authors. Academics publish and the problem with the concept of an archive is that it is generally perceived as a mode of preservation, not a mode of publishing. Archiving also depends on the voluntary depositing of already published, or about to be published, material, and some strategy is needed to ensure that academics collaborate. A start has been made in the direction of motivating participation by the decision of the research councils to require the open archiving of all papers resulting from the research they fund....[PS: Omitting a call for OA journals that charge no fees on the author side or the reader side.]

Comment. Wilson is right to point to the draft RCUK policy as exemplary. But it has not yet been adopted and it appears to be weakening under the onslaught of publisher lobbying.

The Free Curricula Center (FCC) helps students worldwide reach their educational potential by producing and distributing university level curricula that can be copied freely and modified cooperatively. Specifically, FCC serves as a focal point for the development and sharing of textbooks, instructor guides, and other educational materials. These materials, called free curricula, are released at no cost into the public domain or under an "open source" style license. This license allows anyone to make and distribute copies without having to pay, and to modify the curricula as long as those modifications are released under the same terms. The Center helps its participants work together to create textbooks, instructor guides, and other materials for the subjects in which they have expertise. We do this by providing online tools to help educators collaborate successfully and by proving a space on the Internet where students can have free, easy access to their finished products. We also serve as a link to the resources of others, and mirror their material when permitted....In short, the Center wants to do for educational curricula what open source software has done for computing: focus cooperative efforts to bring about low cost, high quality alternatives to commercial products.

FCC currently offers two OA textbooks, one in philosophy and one in statistics. Submissions are evaluated by one of four committees, depending on the discipline. Authors may choose from a variety of open licenses. FCC also hosts several discussion lists on FCC issues in different fields and a (currently small) set of working papers on OA-related issues. It welcomes submissions, new members for its committees, participants in its discussion groups, and donations. For more details, see the FAQ.

While the Internet is certainly affecting how the mainstream media works, there’s another area that the anyone’s-a-publisher paradigm is affecting: the world of scientific journals. The place I used to work, the American Chemical Society, just laid off a bunch of people who put its journals together, outsourcing the operation to the company that prints them. The move is indicative of the pressure scientific organizations are feeling as a new generation of scientists enter the lab having grown up in an Internet world. The ACS and other science societies (as well as private publishers) make a lot of money selling science-journal subscriptions to university libraries....Scientists’ standing in their communities is determined by where they’ve published and how often those papers are cited. And believe me, these folks keep careful track of all those data. So publishing those journals is a great business: You get your content free, then charge university libraries thousands of dollars for subscriptions. In other words, colleges pay to receive the papers their own faculty has written....For a scientist, publications are currency. The more you publish, the more you’re worth in terms of the pecking order and - more importantly - the better shot you have at getting grants. And it’s that economy that the Internet is poised to shake up....

Scientific journals are notoriously expensive, and libraries are notoriously under funded. The fact that those libraries are paying for material the publishers got free is galling to a lot of people.  What's emerging is what's called open-access science - something made possible by the Internet. With it, a scientist can make a paper public by putting an electronic copy where everyone can access it and granting the world the right to use, copy, and distribute it.  Organization such as BioMed Central and the Public Library of Science help publish open-access journals. With these, the scientists pay to be published (using their grant money) and the publication is made available free to everyone.  That means you can go to BioMed Central and read any of the papers in any of the journals. You can't do the same at the ACS's site (despite the fact that your tax dollars paid for much of the research there)....

Even the format of scientific papers is likely to be changed by the Internet. The rise of the blog and other short-form media has ushered in the era of the quick hit. While there are plenty of long-format bloggers, the traditional blog entry is short and sweet, peppered with references to other sources....Formal, polished communication is making way for simple, blunt data. And scientists are not immune from appreciating this. What’s going to happen is that more scientists, especially younger ones, will begin self-publishing their results before they bother to write a formal paper. They’ll put them on their websites or blogs to solicit comments, and turn science into a conversation the way only modern technology allows. How will all this affect traditional scientific journals? That depends on how long it takes the next generation of scientists to take the reins in deciding what’s more valuable - the information or the popularity contest. Judging by the Internet’s history, it won’t be too long before we have an answer.

Abstract: Institutional repositories (IRs) are a recent feature of the UK academic landscape. You may already have one at your workplace (in which case you might be better to skip to the next article); you will probably have heard the term being bandied about by your colleagues; you might even have come across one when trawling the web. But what is an IR? Should your institution have one? And if so, how would you go about creating it? These are some of the questions we hope to address in this short article.

MIT has proposed two OA policy steps: compliance with the NIH Public Access Policy and seeking consensus on copyright retention....

(1) The two steps taken by MIT are a very good thing, compared to taking no steps at all, but:

(2) Step one, explicitly formalizing compliance with the current NIH Public Access Policy, is a retrograde step, as it helps entrench the flawed NIH policy in its present form (a request instead of a requirement, a 6-12-month delay instead of immediate deposit, and depositing in PubMed Central instead of in the fundee's own Institutional Repository).

(3) Step two, seeking university-wide agreement on copyright retention, is not a necessary prerequisite for OA self-archiving, and there will be time-consuming resistance to it, from both publishers and authors. Hence it is the wrong thing to target first at this time. (University of California is making exactly the same mistake.)

(4) What MIT should be doing is neither formalizing compliance with the current NIH policy nor giving priority to copyright retention (even though copyright retention is highly desirable).

(5) What MIT should be doing is to require that all MIT researchers deposit, in MIT’s IR, the final refereed drafts of all their journal articles, immediately upon acceptance for publication.

(6) In addition, MIT should encourage that all MIT researchers set access to each deposited full text as OA immediately upon deposit -- but leaving them the option of choosing instead to set access as Restricted Access (MIT-only, or author-only) if they wish, and fulfilling email eprints requests generated by the OA metadata by emailing the eprint to the requester for the time being. (Ninety-three percent of journals already endorse immediate OA self-archiving, so only 7% will require the option of eprint emailing of RA deposits.)

(7) Having adopted this two-part deposit/access-setting policy as a mandate, MIT can then go on to its two proposed steps, of complying with the provisional NIH public access policy (by allowing harvesting at the appointed date from MIT’s own IR into PubMed Central) and seeking an MIT consensus on copyright retention.

(8) Instead going straight to (7) without first adopting and implementing (5) and (6) is a huge (and unnecessary) strategic mistake, and a bad model for other institutions to follow.

Comment. (i) I agree that the current NIH policy is flawed. But while we work on strengthening the policy, it's better for researchers to comply than not to comply. Researchers can deposit the same articles in their institutional repository, if they like. When PubMed Central is set up to harvest grantee articles from IRs, then we can recommend that grantees deposit in their IRs instead of, rather than in addition to, PMC. (ii) The MIT contract amendment does not seek to "retain copyright" for authors, only to retain the rights needed for OA and a few other important scholarly uses. It's true that authors don't need to retain full copyright in order to consent to OA, and it's true that most journals already give permission for postprint archiving (without the need for special negotiations or contract language). But something like the MIT contract amendment is needed for those journals that do not already permit postprint archiving. (iii) I fully support Stevan's recommendations in ##5-6.

The inventor of the world wide web has called for more open access to Ordnance Survey (OS) mapping data - and may get his wish later this year. Sir Tim Berners-Lee told an Oxford University audience last week getting "basic, raw data from Ordnance Survey" online would help build the "semantic web", which he defines as a web of data using standard formats so that relevant data can be found and processed by computers. "There's a moral argument that says, for a well-run country, we should know where we are, where things are, and that data should be available," he said. Berners-Lee said it may be reasonable for OS, the premier state-owned supplier of public sector information, to continue to charge for its high-resolution mapping. But even if licences were required, he added, OS should make its data open to manipulation. "I want to do something with the data, I want to be able to join it with all my other data," he said. "I want to be able to do Google Maps things to a ridiculous extent, and not limited in the way that Google Maps is." The guest lecturer said he had discussed this with OS. "They are certainly thinking about this and studying what they can do. OS is in favour of doing the right thing for the country, as well as maintaining its existence, so I think there's a fair chance we'll find mutual agreement." OS said it was considering opening access to data, through applications programming interfaces (APIs) for example, but only for non-commercial use. "If it happens, it will be in the next six months or so," said Ed Parsons, chief technology officer. Parsons said OS provides universities with access to its data. "It's about expanding this to non-academic research," he said. However, those using APIs would be barred from competing with OS's paying customers, even on a non-commercial basis. "We're constrained by competition law," said Parsons. The BBC's Backstage project, which allows non-commercial re-use of BBC material, is a possible model.

Berners-Lee said this debate was the first of many. "What happens with OS is going to be replayed with anonymised medical data, with data about all kinds of public things."...

Meanwhile, according to documents published last week, OS faces losing its official status as a fair trader unless it changes the way it licenses its geographical data. The Office of Public Sector Information (OPSI), a unit of the cabinet office charged with promoting fair access to crown copyright data, says there is substance to complaints from commercial mapping firms that OS has been "obstructive and slow" in licensing its data....[The report] highlights the policy of licensing data for specific uses only, which "appears to many potential and actual users as rigid and unreasonable and does not encourage re-use".

For background on the Ordnance Survey's argument that "we're constrained by competition law", see a second article in today's Guardian, by Charles Arthur, Government organisations under pressure to make money. It contains a list of UK government agencies that are "required by law to make back in revenues what they cost to run." The Ordnance Survey is one of them, as are the UK Hydrographic Office, UK Meteorological Office, and the Medicines and Healthcare Products Regulatory Agency. Many others are not, such as the Environment Agency, the British Geological Survey, and at least three of the research councils. (The article only lists three of the eight RCs, and all three are in the 'no' column.)

This version features [1] Revamped interface, templates and styles. [2] Advanced roles for publishing workflow. [3] Issues management. [4] Basic "plugout" web service. [5] Several bug fixes.

Journal of Biomedical Discovery and Collaboration - Fulltext v1+ (2006+); ISSN: 1747-5333.

Philosophy, Ethics, and Humanities in Medicine - Fulltext v1+ (2006+); ISSN: 1747-5341.

Update (3/25/06). You can now link to every major section and subsection in the bibliography.

Buzzword or not, the Internet is changing and the so-called Web 2.0 applications might mean new ways to work in the research-education-diffusion field (i.e. the University field). This presentation’s goal is raising a reflection and showing a “good” practice in difusion of research, after Ismael Peña’s experience in the area of Public policies for development and ICT4D at the Open University of Catalonia and the use of blogs, wikis and other tools in his ICT4D personal portal.

[D]ata volumes are doubling every year in most areas of modern science and the analysis is becoming more and more complex....With data correlated over many dimensions and millions of points, none of the old steps — do experiment, record results, analyse and publish — is straightforward. Many predict dramatic changes to the way science is done, and suspect that few traditional processes will survive in their current form by 2020....As data volumes grow, it is increasingly arduous to extract knowledge. Scientists must labour to organize, sort and reduce the data, with each analysis step producing smaller data sets that eventually lead to the big picture. Analysing terabytes of data (one terabyte is 1,000 gigabytes) is a challenge; but petabyte data sets (of more than 1,000 terabytes) are on the horizon. One petabyte is equivalent to the text in one billion books, yet many scientific instruments, including the Large Synoptic Survey Telescope, will soon be generating several petabytes annually....

Procedures already involve instruments and software with myriad parameters. It is difficult to capture all the model numbers, software revisions, parameter settings and process steps in an enduring format. For example, imagine a measurement taken using a DNA-sequencing machine. The output is cross-correlated with a sequence archive (GenBank) and the results are analysed with Matlab. Fully documenting these steps would be arduous, and there is little chance that someone could repeat the exact procedure 20 years from now; both Matlab and GenBank will change enormously in that time. As experiments yield more data, and analysis becomes more complex, data become increasingly difficult to document and reproduce. One might argue that complex biological experiments have always been difficult to reproduce, as there are so many variables. But we believe that with current trends it is nearly impossible to reproduce experiments. We do not have a solution for this problem, but it is important to recognize it as such....Standards are essential at several levels: in formatting, so that data written by one group can be easily read and understood by others; in semantics, so that a term used by one group can be translated (often automatically) by another without its meaning being distorted; and in workflows, so that analysis steps can be executed across the Internet and reproduced by others at a later date....

Many scientists no longer 'do' experiments the old-fashioned way. Instead they 'mine' available databases, looking for new patterns and discoveries, without ever picking up a pipette. But this data-rich approach to science faces challenges. The speed of the Internet has not kept pace with the growth of scientific data sets. And so large data archives are becoming increasingly 'isolated' in the network sense —one can copy gigabytes across the Internet today, but not petabytes. In the future, working with large data sets will typically mean sending computations to the data, rather than copying the data to your workstation. But the management of distributed computations raises new questions of security, free access to public data and cost....The publication process itself is increasingly electronic, with new ways to disseminate scientific information (such as the preprint repository arXiv.org). But there is, as yet, no standard for publishing large volumes of data. Paper appendices cannot hold all the data needed to reproduce the results. Some disciplines have created their own data archives, such as GenBank; others just let data show up, and then disappear, on individual scientists' websites. Astronomers created the International Virtual Observatory Alliance, integrating most of the world's medium and large astronomy archives. This required new standards for data exchange, and a semantic dictionary that offers a controlled vocabulary of astronomy terms. To encourage data sharing, it should be rewarded. Public data creators and publishers should be given credit, and archives must be able to automatically provide provenance details. Current databases have a long way to go to achieve this ideal.

PS: Also see other Nature articles from the same issue on 2020 Computing (all OA). The Szalay-Gray article above is based on a longer report from Microsoft Research.

There is a lot of talk about generating curricula using open source methodologies, that is, roughly, allowing free distribution of curriculum materials while inviting outside contributions to the work, both on the grassroots level and engaging some big guns like IBM and the Hewlett Foundation. While I'm certainly philosophically supportive of these ideas and initiatives, I haven't seen anything yet that is sufficiently grounded in practical experience with either open source software development or curriculum design to get very far off the ground....

[T[o get high quality open curriculum, we need one of two things. One route is to wait for a cadre of latter-day Nancie Atwell cum Linus Torvalds figures who will create ongoing bodies of work on the web under open licenses....I don't have any particularly bright ideas at this point for facilitating that process in the short term.

The second route would be to find some curriculum currently under a proprietary license that might be a good candidate for re-licensing under an open content license. Let me give you an example of a good candidate of this process. Ideally, it would be an innovative curriculum developed in a partnership between leading academics and classroom teachers that represents the best practices, tested over a period of years. It should have a deep philosophical underpinning, so the project maintains a consistent focus....It should be savvy in its approach to media and technology, thus of interest to the teachers most likely to be attracted to open content online. A likely candidate would also have recently fallen out of print, having prematurely succumbed to changing pedagogical fashion and politics. The chunk of curriculum initially released should be around a year's worth; enough to unfold a complete, coherent sequence but not more than a first wave of readers and contributors can wrap their heads around. A nice vision, but could we find such a thing? Happily, yes. I submit to you Pacesetter, a set of capstone courses for high school seniors in English, Math and Spanish launched in 1993 by the College Board as an alternative to their AP courses and, from what I can tell from their website, essentially shut down last year....

What we need now is some of the institutions that are gabbing about this stuff, foundations like Hewlett and corporations like IBM, to step up to the plate and make a proposal to The College Board to open up the Pacesetter curriculum. There are lots of plausible models for this. The most obvious one is probably Sun's StarOffice/OpenOffice.org setup. The College Board could maintain the Pacesetter trademark and sole rights to offer Pacesetter assessments. The curriculum materials would be turned over to a non-profit who would put them on the web under a different name under a Creative Commons license. The College Board would always have the option to fold contributed materials back into Pacesetter and revive it as a commercial product and assessment if they chose to do so. There is no reason this can't happen. It makes perfect sense.

Comment. This case is is a good example of a slam-dunk that's nevertheless critically important to win. If it had gone the other way, it could have crippled science, especially OA science. See my comments on it from last November, when the case was filed.

I look after all the maps for the council where I work and yes, even government departments and councils etc have to pay for Ordnance Survey data. Local government has interesting scenarios where the taxpayer will pay three times or more for Ordnance Survey Data. One of the most interesting scenarios is Planning Applications.

1st payment to OS: if a member of the public wants to submit a Planning Application they can buy a site plan map, usually from the council (cost of about £25 for an 4 x A4 sheets) or other OS licenced data reseller. 2nd Payment to OS: the Planning Authority (local council) also have to buy their map base from Ordnance Survey every year. Part of what is called the Mapping Services Agreement (MSA). 3rd Payment to OS: the member of the public also pays for Ordnance Survey data as part of their normal taxes. There is also a 4th Payment (which is the biggest scandal) that goes to Ordnance Survey and the Post Office, to use our council-created and council-maintained Local Land and Property Gazetteer (LLPG) or local address database. Even though all the councils create and maintain their own address gazetteer, we have to pay the OS and Post Office for the privilege of using that address data. The OS says that it owns the copyright of the position of the address, and the Post Office says it own the copyright of the address (because it adds the postcode). Councils therefore have to pay a per-click cost to OS and Post Office to use the council-created addresses on our own website address lookup facilities. The irony about all this is that the local council creates the address in the first place (Street Naming and Numbering sections) and gives (for FREE) this information (including site plan) to the Post Office and Ordnance Survey - so they are in essence charging the local council for its own information. Therefore the public have to pay the Council to create the address (Street Naming and Numbering dept) and then pay again to the OS and the Post Office for the right [for the council] to use it. Now, if the council wants to use Addresses (LLPG) created by a neighbouring council(s) (eg for cross-council working/Partnership working etc) the cost goes up even more. The tax payer has to pay the council to create the address data (Street Naming and Numbering dept), OS and Post Office to use the address, and again if used on a web address search facility. Then a neighbouring council will have to pay extra money to the OS and Post Office to use the same address (if it’s not in its postcode area) and finally pay again to use the address in a address search facility on its website.

In total the tax payer could pay up to five times for the one address that the council gives to the OS and Post Office for FREE. Finally, taxpayers putting in a planning application online for one building/address using OS data could be paying a total of up to eight times for that one address/building data. Now that is scandalous.

Elsevier MDL and the National Institutes of Health (NIH) have linked databases to make it easier and quicker for academic, government, pharmaceutical and other researchers to obtain more comprehensive information, improve decision making and support discovery breakthroughs. The NIH’s freely available PubChem database of small molecule data, designed to support links to outside chemical information resources, is now cross-indexed with the Compound Index hosted on Elsevier MDL’s DiscoveryGate® platform. “Now, researchers can immediately tell if information related to a specific chemical compound exists in the other system,” said Steve Bryant, director of the PubChem project. “From DiscoveryGate, links connect researchers directly to the relevant information from PubChem. Likewise, researchers using PubChem can link to additional information in DiscoveryGate (appropriate licenses required for accessing DiscoveryGate data sources). This integrated information provision improves the scientific community’s ability to rapidly conduct thorough research.” Lars Barfod, CEO of Elsevier MDL, added: “The value of DiscoveryGate is focused information, relevant to specific research questions, from a network of indexed and linked data sources. This collaboration with the NIH to index PubChem extends the scope of available content, and will help researchers find critical information while avoiding unnecessary, repetitious searches of multiple systems or data sources.”

PS: This isn't the first time a non-OA service has linked up with PubChem. Nature Chemical Biology from the NPG did so in June 2005.

The move in recent years towards provision of scholarly journals in electronic form has greatly enhanced the access to and availability of scholarly publications. However the arrangements for preserving long-term access to electronic journals are far from satisfactory. When subscribing to electronic journals, libraries no longer possess a local copy as they did with printed journals. They effectively lease the content of the electronic journals they subscribe to by remotely accessing it on publishers' servers over the computer network. The problem with this common practice is that access to entire back runs of electronic journals could be lost to academic libraries when subscriptions are cancelled or when journals cease publication. The uncertainty of continuing access is a major barrier preventing libraries from moving to electronic-only subscriptions. The recent endorsement of the statement "Urgent Action Needed to Preserve Scholarly Electronic Journals" by organisations such as the Association of Research Libraries (ARL) and the International Coalition of Library Consortia (ICOLC) highlight the concern in the scholarly community over the long-term future of scholarly electronic journals. There is consensus that a solution to the e-journal archiving problem is urgently needed and that a technically and financially sustainable solution requires collaboration between libraries and publishers. Lots of Copies Keep Stuff Safe (LOCKSS) is a tool developed at the Stanford University Libraries to to address the issues surrounding e-journal archiving and preservation. Over 80 libraries and 60 publishers world-wide now are work together through the LOCKSS Alliance to preserve persistent access to a wide range of content ranging from commercial subscription content to non-profit open-access e-journals.

Abstract: In France, the movement in favour of open access to scientific research output is getting increasingly coordinated and supported at the political level. The CNRS, leading research organization in Europe and signatory of the Berlin Declaration, has an evident strategic role to play in this development. Various initiatives that have emerged in the French academic world in recent years have led, for example, in early 2005 to the joint announcement, by four major research institutions, of a common policy to promote open access to published material and other types of digital resources, and to set up institutional archives. The article highlights some key issues of this policy, gives an overview of the current and past CNRS involvement in Open Access and describes the principal functions, as well as the related challenges, of the future institutional repositories.

Concerned that taxpayer-funded research is not accessible to the general public because of the tightly controlled, proprietary system enforced by some journal publishers, the National Institutes of Health (NIH) is asking every NIH-funded scientist who publishes results in a peer-reviewed journal to deposit a digital copy of the article in PubMed Central (PMC), the online digital library maintained by the NIH. Not later than 12 months after the journal article appears, PMC will then provide free online access to the public.

Director of Libraries Anne J. Wolpert and Vice President for Research Alice Gast discussed with the faculty MIT's response to this issue, which has been to support NIH researchers in complying with the policy, and also to enable any MIT researcher to use a more author-friendly copyright agreement when submitting articles for publication. "The overwhelming majority of work produced by you is licensed back to you, and you can't always use your own work in the way you want to use it," Wolpert told the faculty. Copyright exemptions that were carefully crafted to allow the academy to teach and do research are steadily being superseded by intellectual property regimes that were developed for the benefit of the entertainment industry. "What Disney wants, the academy gets, whether it suits your interests or not," Wolpert said.

Among the reasons for universities to support open access is the high cost associated with renting access to journals, which for MIT alone has grown in the past decade from $2.6 million to more than $6 million a year....

An amendment that can be attached to any publication's copyright agreement was disseminated to principal investigators in February. "We have to wait and see how this plays out and see what feedback we get from publishers," Gast said. The goal is for MIT as an institution to work out agreements with publishers rather than make individual researchers fight their own battles. More information, as well as the amendment, which would override the publisher's copyright agreement, is available online [here] and other MIT web sites. "There is a distinct feeling among our counterparts at large private and public institutions that if MIT takes a reasonable and principled position on this issue, other institutions will be encouraged to do likewise," Wolpert said.

The MIT contract amendment is closely related to the SPARC Author's Addendum drafted for the same purpose. The MIT amendment gives authors (among other things) the non-exclusive right to copy and distribute their own article, to make derivative works from it, and to deposit the final published version in an OA repository. MIT is the first university I know to present its faculty with a lawyer-drafted contract amendment for the purpose of retaining the rights needed to provide OA to their own work. Kudos to all involved. MIT faculty could change the default for faculty with less bargaining power.

As editor-in-chief since 1995 of the main publication of the National Academy of Sciences, Cozzarelli changed the journal's methods for reviewing submitted manuscripts, according to Botchan, making it a scientific publication that now vies for prestige with the best. "Nick deserves almost the entire credit for making PNAS a high impact journal," said Arthur Kornberg, Nobel laureate and Stanford University professor emeritus of biochemistry. Cozzarelli was a post-doctoral fellow in Kornberg's laboratory from 1966 until 1968.

Cozzarelli also was a champion of open access publishing, that is, allowing the public, not just a journal's paid subscribers, to read scientific articles. PNAS was one of the first publications to alter its policy and allow free public access via the Internet, although its high-profile competitor publications have yet to follow suit....He was on the editorial boards of many publications, including the first open access journal, the Public Library of Science (PLoS) Biology.

PS: On OA issues, and many others, Cozzarelli was a leader among editors of high-prestige, high-impact journals. He grasped the argument for OA very early and his willingness to experiment with PNAS was bold and canny. He will be missed.

Last December, delegates from sixteen countries worldwide met at GL7 in Nancy, France to address the principles of open access as they apply to grey literature. Information professionals from sectors of government, academics, and business presented results of research projects intended to facilitate open access to grey resources. These results no doubt will allow for the further assessment of information policies both within and outside their respective organizations.

While there was general consensus on the benefits of open access, there were clear differences in how the principles of OA would be implemented. This ranged on a broad continuum between the position of The Royal Society on the one side and that of the Wellcome Trust on the other.

GreyNet seeks to remain in the forefront of this movement, but at the same time feels committed to keeping lines of communication open between these farthest positions....

Since the relaunch of GreyNet by TextRelease in 2003, authors both in the GL Conference Series as well as those contributing to The Grey Journal (TGJ) sign-on to a  “non-exclusive rights agreement”. The authors remain free to deposit their own work in other online repositories, which they deem fit. This non-exclusive rights agreement further allows GreyNet to negotiate licensing and cooperative publishing exchange of the full text and metadata contained in its in-house content base.

In this issue of TGJ, a number of papers mainly from GL7 have been selected and brought together under the theme “Grey Matters for OAI”....

• Cees de Blaaij (Netherlands), Public funded research and Open Access: Perspectives and policies
• Stefania Biagioni (Italy), Assisting scientists to make their research results world wide freely available: an experience begun in the 90s
• Rosa Di Cesare, Daniela Luzi, and Roberta Ruggieri (Italy), Open archives and SIGLE participation in Italy:  Is there a subtle link between the two experiences?
• Mohammad Reza Ghane (Iran), A Survey of Open Access Barriers to Scientific Information:  Providing an Appropriate Pattern for Scientific Communication in Iran
• Hyekyong Hwang and three co-authors (South Korea), Patterns of Research Output produced by Scholarly Communities in South Korea
• Manorama Tripathi, H.N. Prasad, and S.K. Sonker (India), Open Access to Grey Literature: Challenges and Opportunities at the Banaras Hindu University in India

PS: It's not difficult to understand the explosive growth in citations to high quality, peer-reviewed research which is available without barriers.

Deployment of repositories within institutions means many information professionals are facing unfamiliar implementation configuration and policy decisions. Institutional repositories might be considered as digital libraries in miniature, yet whilst many of the information management and technical issues are similar, repositories introduce the potential for significant changes in the workflow of delivering content from author to reader. After all, this is what open access is about. One of the areas of interest within the JISC Digital Repositories Programme is exploring how the user will interact with the emerging network of relatively small (at this stage) content collections. Will this be through search? or through citation linking? These end-user interfaces will rely on a level of interoperability in the way content is managed across the different repository software platforms, as well as on consistent identification of objects within the repositories. The JISC Digital Repositories Support team working across CETIS (Centre for Educational Technology Interoperability Standards) and UKOLN is addressing some of these interoperability issues, initially focusing with UK repository developers on the deposit of content into repositories, and with an international working group looking at a wider range of repository interfaces.

There is a movement within many academic circles to make such materials more accessible by posting them online. A new partnership between Georgetown University Press and Digital Georgetown is a step in that direction. Digital Georgetown is an online hub for scholarship materials that launched in 2004 and is directed by Joan Cheverie, a former reference librarian at Lauinger Library. In recent months, Cheverie has been working with Hope Smith-LeGro, electronic editor at GU Press, to put collections of previously published research online. Their first project has been to post the proceedings from GURT, the Georgetown University Round Table on Languages and Linguistics. In the past, the roundtable's work has only been published in book form. Recognizing that some scholars may be searching for specific information, GU Press wanted to provide the materials in format that is readily accessible. "We really view ourselves as an academic resource," Smith-LeGro said. GURT conferences from 1999 to 2001 are now online and free for any user of the site; conferences prior to 1999 are in the process of being transferred to digital format, Cheverie said. GU Press will continue to sell GURT books and will post the content online five years after the print date....Although publishing scholarly materials online is a developing trend at universities worldwide, the collaboration between an academic press and the library system is rare, Cheverie said. "We've found a great synergy in this partnership because we have such complementary missions," she said.